rs30043079 SNP Detail

Summary

• ID
  rs30043079
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:50319581 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCTTCAGC TTAAAGCAGT
  ATTTATTATA GAAAAGAAAC ATGATGCTTA ATATGTAAAC TATGAAATAT TTATTCAAAT
  GTCCATTTGA AGTATTTTCA AGTAAAAATA TACAAACACA GACATATAGA GAAGCAGCTA
  GAAGCATTAA CAAGTGGCCA GCTCCGCAAA TGAAATGTAA TTCAACAATG CAAATTTTTG
  Y
  GACATCATAC TGCACCAATG CATCCATACA AAAAGATGAA CAAGAATTCC CATCGGGAAG
  TACATTTGTT CCACTGTGCT TTTCCAGTCC TACAAATAGC GCACAAATAC CATCGAGCAA
  TGAGTTTGTT GCAGCAGCAC TCTCCCAAGA GGGAGCTCAC TTCGCTGTGG AACCTGCTTT
  ATCTCACACA TCACATGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49593955	NES12919627	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30043079					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49593955	NES12919627	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:50319581 () rs orientation: forward

Symbol	Name	Function Class
Slc7a11	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	within coordinates
Tssr33101	transcription start site region 33101	1280 bp downstream
Tssr33102	transcription start site region 33102	1301 bp downstream
Tssr33103	transcription start site region 33103	1385 bp downstream
Tssr33104	transcription start site region 33104	1397 bp downstream
Tssr33105	transcription start site region 33105	1458 bp downstream
Tssr33106	transcription start site region 33106	1502 bp downstream
Tssr33107	transcription start site region 33107	1527 bp downstream
Tssr33108	transcription start site region 33108	1591 bp downstream
Tssr33109	transcription start site region 33109	1656 bp downstream
Tssr33110	transcription start site region 33110	1710 bp downstream
Tssr33111	transcription start site region 33111	1743 bp downstream
Tssr33112	transcription start site region 33112	1782 bp downstream
Tssr33113	transcription start site region 33113	1828 bp downstream
Tssr33114	transcription start site region 33114	1852 bp downstream
Tssr33115	transcription start site region 33115	1911 bp downstream