rs30043081 SNP Detail

Summary

• ID
  rs30043081
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:50319335 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTGGATTA GAAAGAAACA
  AGAAATGATA CTCTTGTCAA AGGTCACAAA TGAAAAGACT TTGTCCTACA GGTGAAAATA
  ACACATTAGG TAAATGAGAG CAGAAGCTAG ACAGACATGT ACTCTGAAGA TGCTGGAGAG
  ATGGGACCTG CCTACACTGT TACTTTACAT ACAGCAAATT AGTGCCAAGA AATAGTTCAA
  Y
  ACATGCAGAC AATCAATGAG ACAAAAAAAA AATCATAAAA AGCGCCAGCT TCAGCTTAAA
  GCAGTATTTA TTATAGAAAA GAAACATGAT GCTTAATATG TAAACTATGA AATATTTATT
  CAAATGTCCA TTTGAAGTAT TTTCAAGTAA AAATATACAA ACACAGACAT ATAGAGAAGC
  AGCTAGAAGC ATTAACAAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49593958	NES12919624	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30043081					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49593958	NES12919624	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:50319335 () rs orientation: forward

Symbol	Name	Function Class
Slc7a11	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	50 bp downstream
Tssr33101	transcription start site region 33101	1526 bp downstream
Tssr33102	transcription start site region 33102	1547 bp downstream
Tssr33103	transcription start site region 33103	1631 bp downstream
Tssr33104	transcription start site region 33104	1643 bp downstream
Tssr33105	transcription start site region 33105	1704 bp downstream
Tssr33106	transcription start site region 33106	1748 bp downstream
Tssr33107	transcription start site region 33107	1773 bp downstream
Tssr33108	transcription start site region 33108	1837 bp downstream
Tssr33109	transcription start site region 33109	1902 bp downstream
Tssr33110	transcription start site region 33110	1956 bp downstream
Tssr33111	transcription start site region 33111	1989 bp downstream