rs30043082 SNP Detail

Summary

• ID
  rs30043082
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:50319274 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACATG TACTCTGAAG ATGCTGGAGA
  S
  ATGGGACCTG CCTACACTGT TACTT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49593960	NES12919622	PERLEGEN	MM_PANEL2	f	SNP	G		C	C	G	G	G	C	C		C	C	G	C		G
ss135158350	ENSMUSSNP5816517	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C					C
ss320757140	CHEV_3_50168747	CHEVERUD	SCREENING_POP	f	SNP										C					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30043082					SNP	G	G	C	C	G	G	G	C	C	C	C	C	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49593960	NES12919622	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:50319274 () rs orientation: forward

Symbol	Name	Function Class
Slc7a11	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	111 bp downstream
Tssr33101	transcription start site region 33101	1587 bp downstream
Tssr33102	transcription start site region 33102	1608 bp downstream
Tssr33103	transcription start site region 33103	1692 bp downstream
Tssr33104	transcription start site region 33104	1704 bp downstream
Tssr33105	transcription start site region 33105	1765 bp downstream
Tssr33106	transcription start site region 33106	1809 bp downstream
Tssr33107	transcription start site region 33107	1834 bp downstream
Tssr33108	transcription start site region 33108	1898 bp downstream
Tssr33109	transcription start site region 33109	1963 bp downstream