rs30043083 SNP Detail

Summary

• ID
  rs30043083
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:50319201 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTCA CAAATGAAAA GACTTTGTCC
  Y
  ACAGGTGAAA ATAACACATT AGGTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
ss49593961	NES12919621	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	T	C		C		C	T		C
ss135158344	ENSMUSSNP5672451	ENSEMBL	ENSEMBL_Sanger	f	SNP		C					C
ss320757138	CHEV_3_50168674	CHEVERUD	SCREENING_POP	f	SNP									C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
rs30043083					SNP	T	C	C	T	T	C	C	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49593961	NES12919621	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:50319201 () rs orientation: forward

Symbol	Name	Function Class
Slc7a11	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	184 bp downstream
Tssr33101	transcription start site region 33101	1660 bp downstream
Tssr33102	transcription start site region 33102	1681 bp downstream
Tssr33103	transcription start site region 33103	1765 bp downstream
Tssr33104	transcription start site region 33104	1777 bp downstream
Tssr33105	transcription start site region 33105	1838 bp downstream
Tssr33106	transcription start site region 33106	1882 bp downstream
Tssr33107	transcription start site region 33107	1907 bp downstream
Tssr33108	transcription start site region 33108	1971 bp downstream