rs30046015 SNP Detail

Summary

• ID
  rs30046015
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:46343398 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGTTGAAG AATAAAAGAC
  AGGATGATAG GAGAATAAAG GAAGCAAGTA GGGAAGGCTT TCCATACAAG TCCTAAAAGC
  CATTTACAGA AACTTGGAGG AGTGTTTTGA ATGCAGAAGA CCTGGCAGCA AGTAGGAAGG
  CTCAGCTCTC TTCTATTGAG AACTTGGCTC TCATGAGTGG CCTGGGGAGA CAGGCGTTGC
  K
  TTTTCAGGAG GCATGCAGAG AAACAACAGC CACCTGGCAT CCTTCTTGCC AGCATCTTTC
  ACAAACAGCA CACAACAGTA GTTCAGCTGA ACAGCAGATG ACCATAAAGC ACTCAGAGCT
  AAGTGAGCTC TCTGAGCAGA GACAAGAACC CTGGAGGCAC CTGGCAAACG TAATGGTAGA
  ATATATTTTT TTAACTTCTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39145632	mCV23254453	ABI	CRAMUS_MOUSE	f	SNP	G	G	T					T		T
ss61787363	NES17720965	PERLEGEN	MM_PANEL2	f	SNP	G		T	T	T	T	T		G	T	T	T	T	T	T	T	T
ss148971879	ENSMUSSNP7171402	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30046015					SNP	G	G	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61787363	NES17720965	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:46343398 () rs orientation: forward

Symbol	Name	Function Class
Gm10113	predicted gene 10113	within coordinates
Rr272082	regulatory region 272082	798 bp distal
Rr276190	regulatory region 276190	1398 bp distal