rs30050415 SNP Detail

Summary

• ID
  rs30050415
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:113171605 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCGCG CCGCTCGGGA GGCCCAGTGC
  K
  GGGGCGCGGG TAGGAGGGCG GGACC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39145316	mCV23842485	ABI	CRAMUS_MOUSE	f	SNP	G	T	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30050415					SNP	G	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:113171605 () rs orientation: forward

Symbol	Name	Function Class
Cdc20b	cell division cycle 20B	40 bp upstream
Cpgi6107	CpG island 6107	within coordinates
Gm61413	predicted gene, 61413	1969 bp downstream
Mir449c	microRNA 449c	912 bp upstream
Mirc34	microRNA cluster 34, including Mir449a through Mir449c	912 bp proximal
Rr486471	regulatory region 486471	within coordinates
Rr486472	regulatory region 486472	1033 bp proximal
Tssr121165	transcription start site region 121165	156 bp upstream