rs30050512 SNP Detail

Summary

• ID
  rs30050512
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:129853092 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTAAG ACTAAACCAT CATTTTTTTT
  W
  AATTGTGAAT AAAAAATTCC ACCTG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45389294	mCV24295824	ABI	CRAMUS_MOUSE	f	SNP	A	T	T	A
ss135891467	ENSMUSSNP4845838	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T		A
ss320964115	CHEV_3_129762361	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30050512					SNP	A	T	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:129853092 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13821	CpG island 13821	461 bp proximal
Rr585124	regulatory region 585124	128 bp proximal
Rr585125	regulatory region 585125	1428 bp proximal
Rr585126	regulatory region 585126	1454 bp proximal
Sec24b	SEC24 homolog B, COPII coat complex component	within coordinates
Tssr31665	transcription start site region 31665	1324 bp upstream
Tssr35653	transcription start site region 35653	1230 bp downstream
Tssr35654	transcription start site region 35654	1292 bp downstream
Tssr35655	transcription start site region 35655	1367 bp downstream
Tssr35656	transcription start site region 35656	1395 bp downstream
Tssr35657	transcription start site region 35657	1407 bp downstream
Tssr35658	transcription start site region 35658	1576 bp downstream