rs30051036 SNP Detail

Summary

• ID
  rs30051036
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:37695883 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTAT TTTACTACAA AAAGCAGGTC
  W
  ATTCAGGGCT TGTGAAAATC AAGGT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45389688	mCV25185825	ABI	CRAMUS_MOUSE	f	SNP	T	A	T
ss134809999	ENSMUSSNP3109255	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
ss320711456	CHEV_3_37540656	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30051036					SNP	T	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37695883 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13100	CpG island 13100	318 bp distal
Gm42922	predicted gene 42922	509 bp upstream
Rr575523	regulatory region 575523	1644 bp distal
Rr575524	regulatory region 575524	271 bp distal
Rr575525	regulatory region 575525	937 bp distal
Rr575526	regulatory region 575526	829 bp distal
Spry1	sprouty RTK signaling antagonist 1	Intron
Tssr28909	transcription start site region 28909	1822 bp downstream
Tssr28910	transcription start site region 28910	1791 bp downstream
Tssr28911	transcription start site region 28911	1770 bp downstream
Tssr28912	transcription start site region 28912	1748 bp downstream
Tssr28913	transcription start site region 28913	1532 bp upstream
Tssr28914	transcription start site region 28914	1990 bp upstream