rs30053136 SNP Detail

Summary

• ID
  rs30053136
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:50215803 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTCCAGC AATGGAGGGG
  AAGGGTACTT AAAATCTGGT GTTTAAGCGG TGCTGTAGCT AGTCAACTCA TAATACTCAG
  GAGTCAGCGA CTAGGGGTTT GGAGAGATGG CTCAATGATT AGAGAGGTTA CTGTGCAAGC
  ATGGGATGAG GGCCTCCATT CAGATTCCAG CAACCGAGTT CATCAAATAA ACAAACAAAC
  R
  AAAAGCTGTC TGTAGCCACA TGTTGGCCTA AAGAAGAGCT TGCTGGCCAC CAAATTAACT
  GCAAGTAGAG TTAGAGAGTC GCTCTCCAAG AAATAAGGCA GACAGTTGAA GAGCAGAAGA
  GTGGGTATCC TTCTCTGGCT TTCACATATT TGTGCACTGT CTGGAAACTA CACACAGACA
  CATGCTTATA CACTATACAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ
ss49594592	NES12921142	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ
rs30053136					SNP	G	A	G	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49594592	NES12921142	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:50215803 () rs orientation: forward

Symbol	Name	Function Class
Rr67417	regulatory region 67417	1398 bp proximal
Rr75684	regulatory region 75684	1191 bp proximal