rs30053809 SNP Detail

Summary

• ID
  rs30053809
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:89959401 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGGGGCAG CTCCACCCCA
  TCGCCACCCC CCCTCCGCCC CCAAAACCAG GCCGGATCCG GATCAGAGGC CCAGAGAGGA
  CTGGGGAGGG AGGAGGCCTT CTCCACAAGA CACTGACCCT CCTAAACAAC CCTACCTCAG
  GCTGGGCCCA GGCCTCGCTC GCCCGCGCTC TTTCTCGCTC TCCCCCTTCA GGCTCTAGCC
  R
  CATGCCCCCC CCCTCCGGCT GCCCCAAGCC CCGCCCCGGC CACGCTCCCA AATCGAGGCC
  CCGGCTCTGG CGCGGCCCAG TAGGCCGCGA ACCCAACTAT AAACAAAACC CCCGGCGGCC
  AATTCGAGGT GGGGAGGTTG GACGCCCGGG TTCCCAAGAC CAGAAGGGAG GGTGTACAGT
  GGGGAGACAC ACGGCGTGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45390101	mCV22816927	ABI	CRAMUS_MOUSE	f	SNP	A	A	G
ss135475488	ENSMUSSNP979855	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		G
ss320837369	CHEV_3_89856016	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30053809					SNP	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89959401 () rs orientation: forward

Symbol	Name	Function Class
4933434E20Rik	RIKEN cDNA 4933434E20 gene	within coordinates
Cpgi13449	CpG island 13449	within coordinates
Gm53012	predicted gene, 53012	810 bp upstream
Rr375341	regulatory region 375341	within coordinates
Rr580266	regulatory region 580266	686 bp distal
Rr580267	regulatory region 580267	448 bp distal
Rr580268	regulatory region 580268	within coordinates
Rr580269	regulatory region 580269	196 bp distal
Rr580270	regulatory region 580270	348 bp proximal
Tssr30147	transcription start site region 30147	529 bp downstream
Tssr30148	transcription start site region 30148	458 bp downstream
Tssr30149	transcription start site region 30149	730 bp upstream
Tssr30150	transcription start site region 30150	827 bp upstream
Tssr34189	transcription start site region 34189	338 bp downstream
Tssr34190	transcription start site region 34190	369 bp downstream
Tssr34191	transcription start site region 34191	514 bp downstream
Ubap2l	ubiquitin-associated protein 2-like	within coordinates