rs30054452 SNP Detail

Summary

• ID
  rs30054452
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:147977195 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGATGGAAG AAAATTAGCC
  CATTCAGTGG TGACTTGGTT AATAACCAGT TTGTTCAACT TTCCTTTGCT TTCTGTCCCT
  GTCGGCGTAG TGGATGTCTA AACAACGGTA TTTGGTCAAG CCCTGATAGA TCAATAACGG
  AAAGCCGTTA ACGTGGGCGT ACAGAAACAG TATTTGGTCA GCCCCTGATA GATCACTAGC
  R
  GAATGCAGTT AGTCACACTT ACTTAGTGCA GTTGATATTA AGAGCTGGTA AGGGTTCCTC
  ACGCTTACTT CTCGACTCCC ACATCAGCTG TAACAGAGCA TTCTCATTTT CCACATGAAA
  GCCACGGGGT CCGTTTCAGA GCACAGACCC AACAGACTCA ACACCAAAAG ATTAAGTGCC
  TAAGCTGCCT GACATTGCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45389837	mCV22801879	ABI	CRAMUS_MOUSE	f	SNP		G	A						A
ss47037275	NES10847998	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	A	G	A	G	A	A	A		G	A	A	G		A
ss136057875	ENSMUSSNP4811174	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						A
ss321014831	CHEV_3_147934523	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30054452					SNP	G	G	A	G	A	G	A	G	A	A	A	A	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47037275	NES10847998	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:147977195 () rs orientation: forward

Symbol	Name	Function Class
Rr587183	regulatory region 587183	397 bp proximal
Rr587184	regulatory region 587184	1011 bp proximal