AACAG TTACTCCTTT TAATCACTCC R TGCCATCAGA AGGCCTGAGC AATGA R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss45391385 | mCV22681614 | ABI | CRAMUS_MOUSE | f | SNP | A | G | A | ||||||||||||||
ss51444680 | NES14435720 | PERLEGEN | MM_PANEL2 | f | SNP | A | G | G | G | A | G | G | A | A | G | G | A | A | G | G | ||
ss134693986 | ENSMUSSNP5247181 | ENSEMBL | ENSEMBL_Sanger | f | SNP | G | A | |||||||||||||||
ss320687273 | CHEV_3_26229094 | CHEVERUD | SCREENING_POP | f | SNP | A | A | |||||||||||||||
SNP Consensus Information | ||||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
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rs30055744 | SNP | A | G | G | G | A | G | G | A | A | G | A | G | A | A | G | A | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss51444680 | NES14435720 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr3:26384321 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
A830092H15Rik | RIKEN cDNA A830092H15 gene | 978 bp upstream | ||||||
Cpgi13015 | CpG island 13015 | 1122 bp proximal | ||||||
Nlgn1 | neuroligin 1 | within coordinates | ||||||
Rr77454 | regulatory region 77454 | within coordinates | ||||||
Tssr32829 | transcription start site region 32829 | 865 bp downstream | ||||||
Tssr32830 | transcription start site region 32830 | 1328 bp downstream | ||||||
Tssr32831 | transcription start site region 32831 | 1634 bp downstream | ||||||
Tssr32832 | transcription start site region 32832 | 1658 bp downstream | ||||||
Tssr32833 | transcription start site region 32833 | 1682 bp downstream | ||||||
Tssr32834 | transcription start site region 32834 | 1732 bp downstream | ||||||
Tssr32835 | transcription start site region 32835 | 1762 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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