rs30056459 SNP Detail

Summary

• ID
  rs30056459
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:34355466 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGGGATTAA AAATACATAG AAAATGCCCA ATGAGATTGC
  AAATGAGTGG GGTTTTGAAA GCTGGTTTAG AAGACTGAAG CATTAGCTCA GTGGTAGAGT
  R
  CTTGTAAGAC GGACTCTGTT CATTCTCCAG GATTGTTTAA AAAAAAAAGT TATGGGGGCT
  GGAGAGATGG CTCAGAGGTT AAGAGCACGG ACTGACCTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss39642826	mCV22699464	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss146937902	ENSMUSSNP225711	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs30056459					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:34355466 () rs orientation: forward

Symbol	Name	Function Class
Apc	APC, WNT signaling pathway regulator	within coordinates
Cpgi9813	CpG island 9813	691 bp distal
Rr370354	regulatory region 370354	1512 bp downstream
Rr535610	regulatory region 535610	1419 bp distal
Rr535611	regulatory region 535611	1475 bp distal
Rr535612	regulatory region 535612	757 bp distal
Rr535613	regulatory region 535613	1044 bp distal
Rr535614	regulatory region 535614	146 bp distal
Rr535615	regulatory region 535615	163 bp proximal
Tssr150444	transcription start site region 150444	1482 bp downstream
Tssr150445	transcription start site region 150445	1437 bp downstream
Tssr150446	transcription start site region 150446	1393 bp downstream
Tssr150447	transcription start site region 150447	1293 bp downstream
Tssr152786	transcription start site region 152786	754 bp upstream