rs30056936 SNP Detail

Summary

• ID
  rs30056936
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:50594950 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTTGACGG GGAAAACTGC
  AGCCAGCCCA GCCACAAGTG AAGCCTCATT TGGCCCAAGC CATTGGTAAC TTTCAAATGA
  CAGACAAATT GATAACAAAA ACTATTCTAA TTTTAATGTC CCACGGGAGG ATGATATAGA
  CAGAGCCAGG TGATGCTGTT CTGCAAGTCA CTGGGAAAGC ATCTCCATGT CCACTGGCAG
  Y
  CTGATGTTCT TACCGGTCCT TCCCCTACTT TACTCCGAAT TTTTAACCTA TTTCCCAAAT
  CAGGCCTATA ATTCTGTATA TTTTTCTCCG ATTCTATTTG TCTAGAATTT ATCTGTCTTT
  TCCTGAGCAG AGATTCCTAC TAGGTCATTC TTTTCATGGT ATGTCTCTGA CTCTTCTGCT
  TATCGGAGTC ACCATAATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49595943	NES12915936	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30056936					SNP	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49595943	NES12915936	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:50594950 () rs orientation: forward

Symbol	Name	Function Class
Rr576165	regulatory region 576165	165 bp distal
Rr576166	regulatory region 576166	407 bp proximal