rs30056940 SNP Detail

Summary

• ID
  rs30056940
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:50594573 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACATT ACAAACCAGC TTCTTAACCT
  M
  ATCATCTCAG TTCATTAAAA TCGGC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	SM/J
ss49595947	NES12915932	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	C			A	A
ss135164051	ENSMUSSNP1258772	ENSEMBL	ENSEMBL_Sanger	f	SNP		C				C
ss320758970	CHEV_3_50444046	CHEVERUD	SCREENING_POP	f	SNP							C			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	SM/J
rs30056940					SNP	A	C	A	A	C	C	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49595947	NES12915932	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:50594573 () rs orientation: forward

Symbol	Name	Function Class
Rr576165	regulatory region 576165	within coordinates
Rr576166	regulatory region 576166	784 bp proximal