rs30057244 SNP Detail

Summary

• ID
  rs30057244
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142266199 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACCCAGAA AACGCAATGA
  CAATCATTGA TTAGTAGTGT TCCCTGGTGA GTACTACAGA CAGACTTGTG TGCCAAGTGT
  GATTCTGTTT TCTCCTTTTT TTTTTTTTTT TTTTTGCATC GGTGATGGAA CACACTGTAG
  GAAAGAAAAA AAGTCTCAAT CTGCAAGATG TGGCGGGGTG ATAACTGCAG AAAGTTCGGG
  R
  GGATCTGGGA AATTCCTCAG CTCAGCTGAG GTCACAAATT CTGTTATTTT GTTCAAGCCC
  TCAACGACTG ACTGAGTCAT CAAGCAAGGA GCATGGTTTC GATTTCAGTT CCTTTTATCT
  CAATTTGTGT TTGGGCGGCT GTTACTTTGC CACTTCTAAC AGTGGCTGCT CCAAGGAGCC
  TGGAGCAGTA GGAAGCTCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45390528	mCV23580112	ABI	CRAMUS_MOUSE	f	SNP	A	A	G
ss136014994	ENSMUSSNP5834735	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
ss321002896	CHEV_3_142223402	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs30057244					SNP	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142266199 () rs orientation: forward

Symbol	Name	Function Class
Gbp3	guanylate binding protein 3	within coordinates
Rr398085	regulatory region 398085	within coordinates
Rr586453	regulatory region 586453	17 bp distal
Rr586454	regulatory region 586454	within coordinates
Rr586455	regulatory region 586455	391 bp proximal
Tssr32157	transcription start site region 32157	333 bp downstream
Tssr32158	transcription start site region 32158	304 bp downstream
Tssr32159	transcription start site region 32159	272 bp downstream
Tssr32160	transcription start site region 32160	224 bp downstream
Tssr32161	transcription start site region 32161	84 bp downstream
Tssr32162	transcription start site region 32162	100 bp upstream
Tssr32163	transcription start site region 32163	134 bp upstream
Tssr32164	transcription start site region 32164	167 bp upstream
Tssr32165	transcription start site region 32165	183 bp upstream
Tssr32166	transcription start site region 32166	519 bp upstream
Tssr32167	transcription start site region 32167	1246 bp upstream