rs30057386 SNP Detail

Summary

• ID
  rs30057386
• Variation Type
  SNP
• Alleles
  A/C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104695760 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAGG TCAGTTTCCA GCTGAGGACA
  H
  GGCAGCACTT CCAGGAGTGT GCTCT                                      
  
  H = A/C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	AKR/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss45389572	mCV22806142	ABI	CRAMUS_MOUSE	f	SNP	T			C		C
ss60431852	NES15936370	PERLEGEN	MM_PANEL2	f	SNP		C	C		C	C	A	C	A	C
ss135571350	ENSMUSSNP5396554	ENSEMBL	ENSEMBL_Sanger	f	SNP	T					C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	AKR/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30057386					SNP	T	C	C	C	C	C	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60431852	NES15936370	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104695760 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13651	CpG island 13651	100 bp proximal
Gm66976	predicted gene, 66976	within coordinates
Rhoc	ras homolog family member C	590 bp upstream
Rr77009	regulatory region 77009	within coordinates
Tssr31056	transcription start site region 31056	128 bp upstream
Tssr31057	transcription start site region 31057	349 bp upstream
Tssr31058	transcription start site region 31058	398 bp upstream
Tssr31059	transcription start site region 31059	582 bp upstream