rs30059026 SNP Detail

Summary

• ID
  rs30059026
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:35906543 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTCAGACAC ACCAGAAGGG GCATCAGATC TCATTACAGA
  TGGCTGTGAG CCACCATGTG GTTACTGGGA ATTGAACTCA GGGCCTTTGG AAGAGCAGTC
  R
  GTGCTCTTAA CCACTGATCC ATCTCTCCAG CCCAGGTAGT AAATCTTGTA CTAAAATGAA
  GCAGGGTCTT TGCACAAAGA AGTTTGATCA AAAGAAAAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39643032	mCV23294417	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	A	G
ss146946374	ENSMUSSNP3020597	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30059026					SNP	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:35906543 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9842	CpG island 9842	997 bp distal
Rr393530	regulatory region 393530	1245 bp downstream
Rr535947	regulatory region 535947	1922 bp distal
Rr535948	regulatory region 535948	704 bp distal
Tssr150553	transcription start site region 150553	1932 bp downstream
Tssr150554	transcription start site region 150554	1891 bp downstream
Tssr150555	transcription start site region 150555	1875 bp downstream
Tssr150556	transcription start site region 150556	1819 bp downstream
Tssr150557	transcription start site region 150557	1780 bp downstream
Tssr150558	transcription start site region 150558	1749 bp downstream
Tssr150559	transcription start site region 150559	1536 bp downstream
Tssr150560	transcription start site region 150560	1359 bp downstream
Tssr150561	transcription start site region 150561	1325 bp downstream
Tssr150562	transcription start site region 150562	311 bp upstream
Ube2d2a	ubiquitin-conjugating enzyme E2D 2A	within coordinates