rs30059700 SNP Detail

Summary

• ID
  rs30059700
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123302383 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGGCT CCTCTGCCCC CATCGGGGTT
  K
  ATGGTTCCGC TTGCGCCCTT CCGCT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	MSM/Ms	SM/J
ss45391149	mCV24054437	ABI	CRAMUS_MOUSE	f	SNP	G	T	G
ss135766579	ENSMUSSNP2372491	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T			T
ss320920399	CHEV_3_123211652	CHEVERUD	SCREENING_POP	f	SNP				G		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	MSM/Ms	SM/J
rs30059700					SNP	G	T	G	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123302383 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13780	CpG island 13780	within coordinates
Gm9369	predicted pseudogene 9369	1208 bp downstream
Rr397991	regulatory region 397991	1700 bp downstream
Rr584523	regulatory region 584523	1815 bp distal
Rr584524	regulatory region 584524	1680 bp distal
Rr584525	regulatory region 584525	within coordinates
Rr584526	regulatory region 584526	185 bp proximal
Rr584527	regulatory region 584527	576 bp proximal
Snhg8	small nucleolar RNA host gene 8	398 bp upstream
Snora24	small nucleolar RNA, H/ACA box 24	668 bp upstream
Tssr31551	transcription start site region 31551	166 bp downstream
Tssr31552	transcription start site region 31552	119 bp downstream
Tssr35502	transcription start site region 35502	393 bp upstream
Tssr35503	transcription start site region 35503	181 bp downstream