rs30060227 SNP Detail

Summary

• ID
  rs30060227
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:38221038 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGA AAAAAAAAAC AGGCTGACTT
  Y
  CTATGACCGT AAACGCCATG GTGGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss39146787	mCV23910842	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss148892349	ENSMUSSNP5896656	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs30060227					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:38221038 () rs orientation: forward

Symbol	Name	Function Class
Cage1	cancer antigen 1	within coordinates
Cpgi5461	CpG island 5461	within coordinates
Riok1	RIO kinase 1	within coordinates
Rr281252	regulatory region 281252	within coordinates
Rr369679	regulatory region 369679	284 bp upstream
Tssr119342	transcription start site region 119342	173 bp upstream
Tssr122123	transcription start site region 122123	149 bp upstream
Tssr122124	transcription start site region 122124	115 bp upstream
Tssr122125	transcription start site region 122125	21 bp downstream
Tssr122126	transcription start site region 122126	103 bp downstream
Tssr122127	transcription start site region 122127	857 bp downstream
Tssr122128	transcription start site region 122128	879 bp downstream
Tssr122129	transcription start site region 122129	909 bp downstream