rs30060731 SNP Detail

Summary

• ID
  rs30060731
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:9466822 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGGC TGTGTCTGCC ACAGGGCCTG
  S
  TACACGGGAC AATACATAAG TGAAG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45391448	mCV23607708	ABI	CRAMUS_MOUSE	f	SNP	C	C	G					C		C
ss60369243	NES15871135	PERLEGEN	MM_PANEL2	f	SNP	C		G	C	G	C	G		G	C	C	C		G	C	C	G		G
ss134574443	ENSMUSSNP818319	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G							C
ss320650889	CHEV_3_9401762	CHEVERUD	SCREENING_POP	f	SNP													C					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30060731					SNP	C	C	G	C	G	C	G	C	G	C	C	C	C	G	C	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60369243	NES15871135	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9466822 () rs orientation: forward

Symbol	Name	Function Class
C030034L19Rik	RIKEN cDNA C030034L19 gene	1258 bp upstream
Gm55345	predicted gene, 55345	413 bp upstream
Rr374488	regulatory region 374488	1699 bp downstream
Tssr28343	transcription start site region 28343	1232 bp upstream
Tssr28344	transcription start site region 28344	1287 bp upstream
Tssr28345	transcription start site region 28345	1349 bp upstream