rs30062406 SNP Detail

Summary

• ID
  rs30062406
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:136494717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGCC TGTTTAATGT CCTAGTTGAA
  Y
  TGTCAAGTAC AGGACAATAA TGAAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45889350	mCV23060338	ABI	CRAMUS_MOUSE	f	SNP		C	C					T		C
ss60953387	NES16181927	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C		C	C	C		C	C	T		C
ss133840255	ENSMUSSNP5633449	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							C
ss321996250	CHEV_6_136466240	CHEVERUD	SCREENING_POP	f	SNP												C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30062406					SNP	C	C	C	C	C	C	C	T	C	C	C	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60953387	NES16181927	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:136494717 () rs orientation: forward

Symbol	Name	Function Class
Atf7ip	activating transcription factor 7 interacting protein	1070 bp upstream
Cpgi18104	CpG island 18104	882 bp proximal
Gm44140	predicted gene, 44140	within coordinates
Rr133547	regulatory region 133547	684 bp proximal
Rr145858	regulatory region 145858	483 bp proximal
Rr400014	regulatory region 400014	849 bp upstream
Rr400015	regulatory region 400015	1247 bp upstream
Tssr59315	transcription start site region 59315	1067 bp upstream
Tssr59316	transcription start site region 59316	1101 bp upstream
Tssr59317	transcription start site region 59317	1147 bp upstream
Tssr63803	transcription start site region 63803	779 bp downstream
Tssr63804	transcription start site region 63804	1042 bp downstream
Tssr63805	transcription start site region 63805	1339 bp downstream