rs30062488 SNP Detail

Summary

• ID
  rs30062488
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:96318998 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAACAAACC AAAACCACAA
  ATAAACGAAT GGGCCTGTCG TCTGTGCAGT CCTTGGGCTC TTGGTATAGT GGACACAAGA
  CCCATTCCGA CTGATTTTTC AGGACTGAAT TACATATTGG TCCTAAAGGG CAGATGAGGA
  ATTTGAAGGG CCCTCCGGGA GGTATTTCCC TGAGGAGACT GGAGACAGAG GTGCATGCCA
  R
  ACACCCACAT TCCATCAGTC TCCAGCTGAA AAAATTAATT GCCTGCCCTT TATGCCATTT
  GTCTTCGGCA TGTGAACTGC AGTCTCAGAG TGGGAGGGGA GGAGAGAACG GCAGGCAGCT
  TAGAGCGGGG GTTCAACCAC GCTGATCTCT TGGCTGCTCC TTTAACTCCT GTGGTGACGG
  ATCGGATCGG AGCATTAGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46368830	mCV25429662	ABI	CRAMUS_MOUSE	f	SNP	G	A	A						A
ss61442173	NES16828182	PERLEGEN	MM_PANEL2	f	SNP			A	A	A	A	A	G	A	A	A		A	A	G	G		A
ss136832074	ENSMUSSNP1007601	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						A
ss323108974	CHEV_9_96337364	CHEVERUD	SCREENING_POP	f	SNP												G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30062488					SNP	G	A	A	A	A	A	A	G	A	A	A	G	A	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61442173	NES16828182	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:96318998 () rs orientation: forward

Symbol	Name	Function Class
BC043934	cDNA sequence BC043934	within coordinates
Cpgi22163	CpG island 22163	83 bp proximal
Cpgi22164	CpG island 22164	558 bp proximal
Gm50488	predicted gene, 50488	within coordinates
Gm68666	predicted gene, 68666	735 bp upstream
Rr368835	regulatory region 368835	1051 bp upstream
Rr684963	regulatory region 684963	245 bp proximal
Rr684964	regulatory region 684964	746 bp proximal
Rr684965	regulatory region 684965	872 bp proximal
Tssr90963	transcription start site region 90963	1216 bp downstream