rs30063183 SNP Detail

Summary

• ID
  rs30063183
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:124018260 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGTAATT CTGTTTCTTC
  AGTATTTTTA TGTCAATTAT GACTTTTTAA AAATGTTCCA AGTTCTAAGA TTTTGTCTCA
  GAATAACAAA AAAAAAATAG GTTAAACAAA AATAGTTAAA ATATGTACAA CAAAATAAAT
  TTATAAGATA AAATTTATTT GAAATAAAAC AAAAGAAATC CCACAATCTG CAAAGGCTTA
  K
  GACCATGTTT TGTTTTTAAA AAATCCCAGG TCAATTATTA TAACCACCTA AATGTTTATA
  AGGGTTGCCC TTATTACTGT AAGAAATGGG TCATTGTTTA CTGATGTTAC CCTGTTTTTG
  AAATTTCCTG GGACCAAAAA AAAAAAAAAA AAAAAAAAAA GAACAGGTAC TTTAAGATTT
  AAAATAAGGC CTTCTGTAGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45391917	mCV25183676	ABI	CRAMUS_MOUSE	f	SNP		T					G		G
ss60445867	NES15938716	PERLEGEN	MM_PANEL2	f	SNP	G	T	G	T	G	T		T	G	G	G		T	G	G		G
ss135782544	ENSMUSSNP3802695	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							G
ss320926392	CHEV_3_123927529	CHEVERUD	SCREENING_POP	f	SNP												G				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30063183					SNP	G	T	G	T	G	T	G	T	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60445867	NES15938716	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:124018260 () rs orientation: forward

Symbol	Name	Function Class
Rr584579	regulatory region 584579	1568 bp proximal