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rs30063876 SNP Detail
Summary
  • ID
    rs30063876
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr18:15198092 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                                     
    TCTCACTTAA GTTTGCCAAC TGCCTTGCAT TCGCCCTCGG GGCTGCGCTG CCTCCGGCGC
    GTGGGGGCGG GCACCTCGGA AACTGGAAAG ACAGCCAGAG AGCTCGCTGG GTCCCGCTTT
    CCCATAGGAG GTACTGTCCC ACTTCCAGCC AGCTTCCGCC CCCGACGCGC CCAGGCTCTG
    GGTGCTTCCT CGCGTCACCA CCAACCTCAC TCCCGGCCCT GGGGGTAGTG CCCTAGTGAC
    ACCAGGACCT TAACTATTCT ATTCGTTGGT GGCAGTAACC GGGGTGGTCA TCCTAACTTT
    Y
    TCCAGCGAAT GTTCACTGGC TTGCCAGCCA GGCCTGAGAC CCAAGGCCAG GAAGAACCGA
    TGGAGCCAGA TCGCAGCAGT GCGCCCAAGT GCCTGGAGAC AACCTCGCCG GGTCCTTGCG
    TGCGTCATTG GAATTTGCCT CTATGTTTCA ATTCAGCTGT GGGGAGTCCT GCCTCAACTA
    TTTGTTCCTT CTTTCCATGT TGCCTGTCTT ACCCCCCTTA CCCCCGCTCC GAGGCTTTTA
    TCATTTTGTG CCACAATAGG AACCATCCAT CAAGTTGTAA TTTACAAGGA ATGTCAAATA
                                                                     
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
C57BL/6J
ss39643085 mCV25032230 ABI CRAMUS_MOUSE f SNP C C T
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
C57BL/6J
rs30063876 SNP C C T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr18:15198092 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi9734 CpG island 9734 within coordinates
Gm58434 predicted gene, 58434 within coordinates
Kctd1 potassium channel tetramerisation domain containing 1 Intron
mRNA-UTR
Rr393314 regulatory region 393314 580 bp upstream
Rr534350 regulatory region 534350 1021 bp distal
Tssr152510 transcription start site region 152510 1418 bp upstream
Tssr152511 transcription start site region 152511 1380 bp upstream
Tssr152512 transcription start site region 152512 921 bp upstream
Tssr152513 transcription start site region 152513 895 bp upstream
Tssr152514 transcription start site region 152514 880 bp upstream
Tssr152515 transcription start site region 152515 809 bp upstream
Tssr152516 transcription start site region 152516 700 bp upstream
Tssr152517 transcription start site region 152517 679 bp upstream
Tssr152518 transcription start site region 152518 661 bp upstream
Tssr152519 transcription start site region 152519 592 bp upstream
Tssr152520 transcription start site region 152520 559 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
07/22/2025
MGI 6.24
The Jackson Laboratory