rs30063939 SNP Detail

Summary

• ID
  rs30063939
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123602930 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCCACAGT CCATCTCTGG
  TCCTGCCATC CTCTCCTCTT CTTTTCCCAC TTGCTTTCTG TCATCCTGCC TTCCATTCTG
  TTCTTGTCCC TTGCTGGAGG GCACAGATGC TGCCTTTCCT CCTTCTGTGA GGACTGACCT
  GATTTGTGTC CTCTTTACTG TCACATGTAC TCATCAAGGA TGTGGAACTT GGTAGGTGAG
  R
  AAGTTGAAAG TAAATATTAT TTAACTTTAA TTTAACATGA ACCTAAATAT AAATAACCAT
  GTATTGGCTG ACCACTCCTT CCAGAATCCT TCCCACAGCC TCTCCACTTA TCATTCAATT
  ACCATTTCCC TGTGTGTTTC CTACTGCTTT AATGGTCTCT AGAGCGACTA GTGAGTGACT
  TTTTAGTTCC TGGGCTCCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss45392501	mCV23882599	ABI	CRAMUS_MOUSE	f	SNP	G	G				A		A
ss51028488	NES13904294	PERLEGEN	MM_PANEL2	f	SNP			A	G	G		G	A	A	A		A	A	G
ss135773758	ENSMUSSNP2556590	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						A
ss320923147	CHEV_3_123512199	CHEVERUD	SCREENING_POP	f	SNP											A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs30063939					SNP	G	G	A	G	G	A	G	A	A	A	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51028488	NES13904294	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123602930 () rs orientation: forward

Symbol	Name	Function Class
Rr584567	regulatory region 584567	482 bp proximal