rs30065513 SNP Detail

Summary

• ID
  rs30065513
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:10607860 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAATAAATC TTTGGGCTGG
  AGCGAACAGA GACTAAGTGA GCAGGACCAA CTAGAGCAAG AAGGTCTGAC CTGAGCAAGG
  AGAGGTGCTA AATTCAATAA CCCAACAACC ACATGAAGGC TCACAACCAT CTGTACAGCT
  ACAGTGTACC CATATACATA AAATAAATAA ATCTTAACTT AAAAAAAAAA ATGTCTAGAG
  Y
  CGGGCATGGT GGCACACGTC TTTAATCCCA GCACTTCGGA GGCAGAGGCA GGCGAATTTC
  TGAGTTCCAG GCCAGCCTGG TCTACAGAGT GAGTTCCAGG ACAGCCAGGA CTACACAGAG
  AGACCCTGTC TCGAAAAAAC CAAAAAAACA AAACAAAACG TTAACTAAAC TCACTGGTAT
  CTCCCCCTCC ACGACACACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39644839	mCV27569883	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss146607030	ENSMUSSNP635716	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
ss325524285	CHEV_18_10607858	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30065513					SNP	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:10607860 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9702	CpG island 9702	1572 bp proximal
Esco1	establishment of sister chromatid cohesion N-acetyltransferase 1	within coordinates
Rr533778	regulatory region 533778	1264 bp proximal
Rr533779	regulatory region 533779	1895 bp proximal