rs30065621 SNP Detail

Summary

• ID
  rs30065621
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:134805814 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGAG CCGAGATAGG TGGATAGCTT
  Y
  AGAGAGCTCA CTTAGCTAGA TAGCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45890212	mCV24013243	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss133787577	ENSMUSSNP5034159	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss321982529	CHEV_6_134778869	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs30065621					SNP	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:134805814 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18077	CpG island 18077	1078 bp proximal
Crebl2	cAMP responsive element binding protein-like 2	1303 bp upstream
Gm67917	predicted gene, 67917	90 bp downstream
Rr368197	regulatory region 368197	1034 bp upstream
Rr639726	regulatory region 639726	109 bp distal
Rr639727	regulatory region 639727	325 bp distal
Rr639728	regulatory region 639728	195 bp proximal
Rr639729	regulatory region 639729	1234 bp proximal
Rr639730	regulatory region 639730	1415 bp proximal
Rr639731	regulatory region 639731	1610 bp proximal
Tssr59250	transcription start site region 59250	1294 bp upstream
Tssr59251	transcription start site region 59251	1365 bp upstream
Tssr59252	transcription start site region 59252	1468 bp upstream
Tssr59253	transcription start site region 59253	1913 bp upstream