rs30066080 SNP Detail

Summary

• ID
  rs30066080
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:86411494 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACTC ACCAGCTCAG CAGCAGCCAC
  R
  GACACAGCTT TCCAGCTTTC CCGTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss39644246	mCV23896703	ABI	CRAMUS_MOUSE	f	SNP		G	A	G
ss147658563	ENSMUSSNP6219303	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G		G
ss325714163	CHEV_18_86562761	CHEVERUD	SCREENING_POP	f	SNP					G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs30066080					SNP	A	G	A	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:86411494 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10352	CpG island 10352	682 bp proximal
Cpgi10353	CpG island 10353	1432 bp proximal
Gm54041	predicted gene, 54041	within coordinates
Neto1	neuropilin (NRP) and tolloid (TLL)-like 1	1583 bp upstream
Tg(Ddx4-cre)1Dcas	transgene insertion 1, Diego H Castrillon	within coordinates
Tssr152242	transcription start site region 152242	1403 bp upstream
Tssr152243	transcription start site region 152243	1424 bp upstream
Tssr152244	transcription start site region 152244	1441 bp upstream
Tssr152245	transcription start site region 152245	1549 bp upstream
Tssr152246	transcription start site region 152246	1583 bp upstream
Tssr152247	transcription start site region 152247	1633 bp upstream
Tssr152248	transcription start site region 152248	1815 bp upstream
Tssr152249	transcription start site region 152249	1906 bp upstream