rs30066407 SNP Detail

Summary

• ID
  rs30066407
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:68292952 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAATGAAG GGCCACAGAG
  AGCCGACTTG GTTGGCTGGT GTGCACAAAT ATGTTCAAGT GTGGTCGCAC GTGTCATGCG
  TATGTATGGC AGTCAGAGGT TGACGTTGGG TGTCCTTCTT AATCATGTTC CACTTTAATC
  ACCGAGGCAG GATCTCTCAT TAGACTTGGT AGCTGGCTCC CCCCCCACCT CACCCCACCC
  M
  GTACCCATTA CTTCCTCCTA GGCACTGGGA TTACAGGCAA GCTATCGCTT CTGCATGGGT
  GCAGGGGACA GAAAGCTTTT CGTGCACCAA GCCACTTGGC TAACTTTCCT CCTTTGTGTG
  ATTAGCTTGC ATCCACTGGC TACACGACAC TTGTAGAGTG CCCTGAGAGC ACCAGGTTAT
  TGCCCTGGAA GTGACCGTTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39643017	mCV23161337	ABI	CRAMUS_MOUSE	f	SNP	A	C	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30066407					SNP	A	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:68292952 () rs orientation: forward

Symbol	Name	Function Class
Ldlrad4	low density lipoprotein receptor class A domain containing 4	within coordinates
Rr393849	regulatory region 393849	1499 bp downstream
Rr540015	regulatory region 540015	1853 bp distal
Rr540016	regulatory region 540016	within coordinates
Tssr151775	transcription start site region 151775	305 bp upstream