rs30066457 SNP Detail

Summary

• ID
  rs30066457
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142955122 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTAATTATA CCCCTATGCT
  ATATGAATAC ACAAAATTTA AAGCAAAAAT AAATTTTTAA CAATAAAAAT ATATGAATTG
  GGTCTGGGCT GCTAGTCAGT AGAACAGCAC TTACCTGGCA TGCCCAGGGC CTTGGGTGTG
  GTCTCCAGTG CTGCAAAGAC ATAAAATAAT ATAATAAAAT AAGCTCACAA ATCAAAAATT
  W
  TTGGACAATA GTATTTTTAA AAAAAATAAG TACAACTTTG GGTTAATCTG CTCTAAATAC
  TAAATCTGTG ATTGTCTCCT AAATGTACAA ACATTTTGAC CTTTGGTAGC TCTAGGAAGT
  AAAGTATGGT TGTATTAAAA GACAAGAATG TAAAAATCAG CCTTTACAAG AATTCTTTTG
  GCAGAGATAT CTAAATGGGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss45393021	mCV24084477	ABI	CRAMUS_MOUSE	f	SNP		A	A			T		T
ss47018307	NES10854369	PERLEGEN	MM_PANEL2	f	SNP	A			A	A		T	T	T		T	T	T		T
ss136022800	ENSMUSSNP3183758	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A					T
ss321005089	CHEV_3_142912325	CHEVERUD	SCREENING_POP	f	SNP										A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs30066457					SNP	A	A	A	A	A	T	T	T	T	A	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47018307	NES10854369	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142955122 () rs orientation: forward

Symbol	Name	Function Class
A830019L24Rik	RIKEN cDNA A830019L24 gene	within coordinates
D3Mit258	DNA segment, Chr 3, Massachusetts Institute of Technology 258	1344 bp proximal
Gm65378	predicted gene, 65378	within coordinates