rs30068525 SNP Detail

Summary

• ID
  rs30068525
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:47260134 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GGTCGCGGCG TCCGACGGGT GGCTGGGTGG GTGCACGGGG TGGCGGGCGG GCGCGAGCCG
  GGGCCTCCGC GCTGAACGGT TGGACGCTAG GGGGCCTGCG AGCTTCCAGC CTCCCGATCC
  CGGGAGAAAA ATGACCGGCC GTCCTGGGCC GCGGAGCCGG GGAGCGTCTG GAGGTGACGA
  AGTTGAGGGA TCCGCCGAAG TCTTTCTCGA CTCGACTTCA CGCGGCGATC ACCCCGCGGA
  CGGGGTTGAT TCGGAGCCAC CACGTTTGTT TCCGAGGGGT CGTTCGAGAT GAAGGCTTCC
  W
  AATGAGACCT ACTTGCGAGG CTTCCCGTCG CCGGTACGCT GCACCGTGAC AGGGACCCAC
  CACGTTAAGT GCTCACACCA CCAGCGACAT AAATAGGTTT CAAACCGGTG AATGTTAGAC
  AGATTCACCC TCTTCCTTTC TCTAGCCCCC TTGGTCTCCC CTATAATGCA GATACGGTAT
  TTGTCCAGCC ACACTCTCCT GTCAAGAATT CTAGGCAAGC CCTCTGATAC CTTTTAGAGT
  CCACAGTTTA AAAGCAACAT TTCCTTACGT GCTCTCCTAT GTGATTGTCT TCATTTTTTC
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss39147918	mCV24531929	ABI	CRAMUS_MOUSE	f	SNP	T	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs30068525					SNP	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:47260134 () rs orientation: forward

Symbol	Name	Function Class
1700026N04Rik	RIKEN cDNA 1700026N04 gene	within coordinates
Cpgi5551	CpG island 5551	within coordinates
Dek	DEK proto-oncogene	457 bp upstream
Rr479039	regulatory region 479039	222 bp distal
Rr479040	regulatory region 479040	within coordinates
Tssr119626	transcription start site region 119626	1066 bp downstream
Tssr119627	transcription start site region 119627	247 bp downstream
Tssr119628	transcription start site region 119628	228 bp downstream
Tssr122369	transcription start site region 122369	1281 bp upstream
Tssr122370	transcription start site region 122370	1134 bp upstream
Tssr122371	transcription start site region 122371	1036 bp upstream
Tssr122372	transcription start site region 122372	956 bp upstream
Tssr122373	transcription start site region 122373	911 bp upstream
Tssr122374	transcription start site region 122374	783 bp upstream
Tssr122375	transcription start site region 122375	548 bp upstream
Tssr122376	transcription start site region 122376	530 bp upstream
Tssr122377	transcription start site region 122377	487 bp upstream
Tssr122378	transcription start site region 122378	452 bp upstream
Tssr122379	transcription start site region 122379	437 bp upstream
Tssr122380	transcription start site region 122380	425 bp upstream