rs30069908 SNP Detail

Summary

• ID
  rs30069908
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:82604101 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GAGCCCGAGT GAAGCACAGC CTCGTCGCAG GGTGGAGGGC TCTTCCTCAG GGGCACCGGG
  TTGCTTCACG GTGCCCTTGG GAGAATACCT CAAGGGGCAC GTTGAGGAGG CCATGCATTG
  ATAAATCAAG AAGATGGAGT AGAGGTGATG TGGGACAGTG ACCCACAACA CACAAGGAAA
  AGGATTTTCA GTCACTCTGA GGACACTTTT CAAAGCCATT GTCCTAGGAA ACACTGCAGA
  AAAGCGGGTC ACGCGCTTTA TCCACGGCGG ACGGGGATTA AGTGAAGCAT TCTTCCCCCC
  Y
  CCCCCCATTT GTCCTTTGTT TCTCTTGCCA TTGATTTTGG TTATGAGACT TCTTTTTCTA
  AAGGATTACC CGAAATCTCT TCTCCTGTTG GTTTTGAGAG CGCTCCTGGC CCCTTTCTGA
  GTTTCCAAGG CAGGCTATGG AAAACCATCA GATTTGTGAG CTGTGGGAGG AAGGCTTGCC
  ATGGGCCAAC ATTACAGTCT TTCTCTGGGG CATGTTGTTC CAGCACAGGG AACCAGTGCA
  GGTTCCTGGG GTCCACTGAC TGACGGGAAA CCTTACCTCC AGGGCTCAGG GGCTCACGTC
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39643985	mCV23909287	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T	T
ss147616998	ENSMUSSNP5901967	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30069908					SNP	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:82604101 () rs orientation: forward

Symbol	Name	Function Class
D18Nds1	DNA segment, Chr 18, Nuffield Department of Surgery 1	484 bp proximal
Gm58829	predicted gene, 58829	338 bp upstream
Mbp	myelin basic protein	339 bp downstream
Rr541827	regulatory region 541827	1841 bp distal
Tssr152152	transcription start site region 152152	1851 bp downstream
Tssr152153	transcription start site region 152153	1727 bp downstream
Tssr152154	transcription start site region 152154	1704 bp downstream
Tssr152155	transcription start site region 152155	1668 bp downstream
Tssr152156	transcription start site region 152156	1599 bp downstream
Tssr152157	transcription start site region 152157	1521 bp downstream
Tssr152158	transcription start site region 152158	1484 bp downstream
Tssr152159	transcription start site region 152159	1460 bp downstream
Tssr152160	transcription start site region 152160	1414 bp downstream
Tssr152161	transcription start site region 152161	1398 bp downstream
Tssr152162	transcription start site region 152162	1377 bp downstream
Tssr152163	transcription start site region 152163	1360 bp downstream
Tssr152164	transcription start site region 152164	1315 bp downstream
Tssr152165	transcription start site region 152165	1242 bp downstream
Tssr152166	transcription start site region 152166	1206 bp downstream
Tssr152167	transcription start site region 152167	1174 bp downstream
Tssr152168	transcription start site region 152168	1145 bp downstream
Tssr152169	transcription start site region 152169	1092 bp downstream
Tssr152170	transcription start site region 152170	984 bp downstream
Tssr152171	transcription start site region 152171	940 bp downstream
Tssr152172	transcription start site region 152172	837 bp downstream
Tssr152173	transcription start site region 152173	822 bp downstream
Tssr152174	transcription start site region 152174	788 bp downstream
Tssr152175	transcription start site region 152175	753 bp downstream
Tssr152176	transcription start site region 152176	564 bp downstream
Tssr152177	transcription start site region 152177	384 bp downstream
Tssr154083	transcription start site region 154083	1746 bp upstream
Tssr154084	transcription start site region 154084	1692 bp upstream
Tssr154085	transcription start site region 154085	1435 bp upstream
Tssr154086	transcription start site region 154086	889 bp upstream
Tssr154087	transcription start site region 154087	668 bp upstream
Tssr154088	transcription start site region 154088	639 bp upstream
Tssr154089	transcription start site region 154089	521 bp upstream
Tssr154090	transcription start site region 154090	461 bp upstream