rs30070199 SNP Detail

Summary

• ID
  rs30070199
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:130368761 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAATCTAACG AAATATGAGT AATAGTCTTT AGAAAGGCAT
  TTCATGTGGA CGTATAGCCA GGAGCCCCCT TACTGTATAT TGTCAGCAAG TACTTTGCAG
  Y
  CCACTGAGAA AACCTCATTC ACCAGCTTTT TAGATAAGAA TTTCCTGGTA GAAATGTCAC
  TAAAGGCCAT CATCTGTGGG GCATGTATTG TCACGTGAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45392967	mCV24294406	ABI	CRAMUS_MOUSE	f	SNP	C	C					C		T
ss51627704	NES14660045	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C	T	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30070199					SNP	C	C	C	C	C	C	C	C	T	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51627704	NES14660045	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130368761 () rs orientation: forward

Symbol	Name	Function Class
Col25a1	collagen, type XXV, alpha 1	Intron
Cpgi13824	CpG island 13824	178 bp proximal
Rr585175	regulatory region 585175	1658 bp distal
Rr585176	regulatory region 585176	149 bp distal
Rr585177	regulatory region 585177	1682 bp proximal
Rr585178	regulatory region 585178	1771 bp proximal