rs30071537 SNP Detail

Summary

• ID
  rs30071537
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:136495062 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTAAGTTTA AGGGATTCCA CCTAATATTA TTTTTCTGGC
  TCTTACTGAT TTACAAAACA TATTTAGAAT CTTTTCTTCA TTCTAGCTTC TCTCAATTTG
  W
  CGGAACAGTG ATTACTGTCT CTATTTAAGC GACACGTGAA TTTATGAGGT GTGAAGGCAT
  GATTGGTACT GCTTGCTCTC TTACAGGATA TCCCCCCAA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45892888	mCV23060255	ABI	CRAMUS_MOUSE	f	SNP		A	A					T		A
ss60953385	NES16181929	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A		T	A	T	A		T	A	A	T		A
ss133840261	ENSMUSSNP4060277	ENSEMBL	ENSEMBL_Sanger	f	SNP			A							A
ss321996252	CHEV_6_136466585	CHEVERUD	SCREENING_POP	f	SNP													A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30071537					SNP	A	A	A	A	A	A	A	T	T	A	T	A	A	T	A	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60953385	NES16181929	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:136495062 () rs orientation: forward

Symbol	Name	Function Class
Atf7ip	activating transcription factor 7 interacting protein	725 bp upstream
Cpgi18104	CpG island 18104	537 bp proximal
Gm44140	predicted gene, 44140	within coordinates
Rr133547	regulatory region 133547	339 bp proximal
Rr145858	regulatory region 145858	138 bp proximal
Rr400014	regulatory region 400014	504 bp upstream
Rr400015	regulatory region 400015	902 bp upstream
Tssr59315	transcription start site region 59315	722 bp upstream
Tssr59316	transcription start site region 59316	756 bp upstream
Tssr59317	transcription start site region 59317	802 bp upstream
Tssr63803	transcription start site region 63803	434 bp downstream
Tssr63804	transcription start site region 63804	697 bp downstream
Tssr63805	transcription start site region 63805	994 bp downstream