rs30071648 SNP Detail

Summary

• ID
  rs30071648
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:48591538 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CTCTATTAAA ATGAATTCTC ATGAGCAAGC ACAGGGAAGA CCAAAATTTA TTTGGAACTG
  ACATTTATTA ACATTATGCA CCAGGAATCT ATCATAAATA TTTTCCCCTG AAATAAAATG
  TCTTAGTTAC TTTTCTGTTT CTGTGATAAA ACACCATGAC CGAGGCAACT TATAAGAAGC
  ATTTAATTTG GCTTATGGTT TCAGAGGATT TGAGTCCATA ATGGTGGAGT GAAGGGACAG
  CTGAGGACAC ACCTTGATCA ATAACCTACA CACACACACA CACACACACA CACACACACA
  S
  ACACCTAGAG AGAGACAGAG ACAGAGACAG ACAGAAGAAC CGGGAATGGC ACAAGTCTTT
  TGAAACATCA AAGCCCACCC CCAGTGACAC ACTCCTGTCA ATGAGGTCAT ACTTCCTTCT
  ACCAACTGAG GGCTAAGTAT TCAGACGTAT GGCCCCTCTG GAGGCCATTC TCATCCAAAC
  TGCCACAGAA AGTCAGTTGA CACTAAGACA TAGGTCAGTC TTCCACCCTG GACTGATAAT
  GCCACCCCGA GTTGTGTGTC ACACTCTCAG TTCCATCAGC CAGTTTGTCT TTTGCTGCAG
                                                                   
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45892242	mCV23167875	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30071648					SNP	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:48591538 () rs orientation: forward

Symbol	Name	Function Class
Gm38804	predicted gene, 38804	190 bp upstream
Gm44965	predicted gene 44965	within coordinates
Gm45021	predicted gene 45021	1354 bp downstream
Gm67224	predicted gene, 67224	798 bp upstream
Rr135555	regulatory region 135555	738 bp distal
Tssr60741	transcription start site region 60741	863 bp upstream
Tssr60742	transcription start site region 60742	822 bp upstream
Zfp775	zinc finger protein 775	within coordinates