rs30071731 SNP Detail

Summary

• ID
  rs30071731
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:122581936 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACCATCAA TAAGATGTCC
  TCAGACATAA CCCGAATGCC GGTCTGATCA AGGCAATTCC CCATTGAGTC TCCCTGAGAT
  AATAACTCTG GGCTGTGCCA AGCTGTCAGC TCTAGCTAAT TAGAAGAAGA AAGAATTGGG
  CTGGAAAGAC AGCTCAGTGG TTAAGAGCAA TGGCTGCTCT CCCAGGGTCA GGTTCCAGCA
  Y
  CCACCTGGCA GCTCACAACT GTCTATAACT CCTGTTCCAA GGGATTTGAC ACCCTGTACA
  GACATATATA CAGTCAAAAC ACCAATGCAC ATAAAATAGA ATTATTTCTA TATATAATTT
  TATAATACAT ATATTTATAT ATATAAATTA TTTTTTAAAA AATAGGGGGC TGGAGAGATG
  GCTCAGAGGT TAAAAGCACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45890579	mCV22300210	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T
ss133609467	ENSMUSSNP3651561	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
ss321934196	CHEV_6_122554995	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30071731					SNP	C	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:122581936 () rs orientation: forward

Symbol	Name	Function Class
Gdf3	growth differentiation factor 3	426 bp downstream
Rr380021	regulatory region 380021	1743 bp upstream
Rr399900	regulatory region 399900	566 bp downstream
Rr638224	regulatory region 638224	274 bp proximal
Rr638225	regulatory region 638225	587 bp proximal
Rr638226	regulatory region 638226	695 bp proximal
Rr638227	regulatory region 638227	1865 bp proximal
Tssr62926	transcription start site region 62926	1865 bp upstream
Tssr62927	transcription start site region 62927	564 bp upstream
Tssr62928	transcription start site region 62928	1569 bp downstream