rs30072627 SNP Detail

Summary

• ID
  rs30072627
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:112574780 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAACACGCT CTGTTTTCTG
  TAGTTAAATT ACTACTTGTC TAGAAAAGCA GGAAACTCGT CACGTCCTGT GAAAACACTT
  AAGATCAGAA CTCTGGAGTC TGAGCAGAGG TGCCAAAGTC AGTGTTCATT GACACCGTGT
  GGTGTGGCAA CAGGCACAGG GCAGAATACA CACTTTGCAT GCTCAGAGCC AAGGCTGCAG
  M
  GAAGCCACAT GATGCCCCTC AGGCGCGTGC CACCAGCCAC CAGCGACAGC AACACCGTGA
  ACTTACTACA TGTTTGATTT CGAATTAGTT TTTGGTGGCT GCATGTTCAG AAACCTTGCA
  TTGTTCCCAA AATTTTGGGG ACGACTGACC TCTGGTCACA TGACCGCAGA TGAGGTCACA
  ACCTATAGTT AGAGAAGCTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39148366	mCV23235844	ABI	CRAMUS_MOUSE	f	SNP	C	A	C	C
ss145238587	ENSMUSSNP307636	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30072627					SNP	C	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:112574780 () rs orientation: forward

Symbol	Name	Function Class
Gm48876	predicted gene, 48876	168 bp upstream
Gm59881	predicted gene, 59881	1108 bp upstream
Gm59893	predicted gene, 59893	582 bp downstream
Rr369776	regulatory region 369776	1255 bp upstream
Rr395952	regulatory region 395952	within coordinates
Rr403991	regulatory region 403991	1736 bp upstream
Rr486370	regulatory region 486370	214 bp distal
Rr486371	regulatory region 486371	within coordinates
Rr486372	regulatory region 486372	629 bp proximal
Rr486373	regulatory region 486373	1130 bp proximal
Rr486374	regulatory region 486374	1785 bp proximal
Tssr121117	transcription start site region 121117	68 bp downstream
Tssr121118	transcription start site region 121118	14 bp downstream
Tssr124051	transcription start site region 124051	184 bp upstream
Tssr124052	transcription start site region 124052	1741 bp downstream