rs30072796 SNP Detail

Summary

• ID
  rs30072796
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:52181912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACAGCCCAT TATGGCAAAA
  TTATTGCATT TCCCTCGCAG TTCCATTAGG ATGTACCAAT TGTGAGGCCG TCAGCTGCCG
  ATCGCACGCC CGGCGAGGAT ACAGAGGATT CGGGGGAGGT GGTGACTTAG AATTATTTAC
  AACAACTTTA TTTCCCCGGC TTTGTATCCC CTCTTATTTT TGTGTAGAGG TTGGGGTCGG
  K
  TTGCCAGCCC GGCCGGCAGC TGTGAATTTT GAAAACACAG ATATCACCTT CGAGGAAGGG
  AAGACGATTT AGCCAATTGA AGAAATAAAT CCTGCCCACA GCAGCAGCCA CAATTACGGC
  TCTGTTTTTG TGAACGCATG AAGGACAGTG CCCCTGCCGC TCTTAAACCA CAGGCGTCTA
  TTAAAGACAG CTTTTGTGTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J
ss45893000	mCV22669671	ABI	CRAMUS_MOUSE	f	SNP	G	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J
rs30072796					SNP	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:52181912 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17423	CpG island 17423	60 bp distal
Cpgi17424	CpG island 17424	712 bp proximal
Gm28308	predicted gene 28308	within coordinates
Hoxa3	homeobox A3	within coordinates
Hoxa5	homeobox A5	475 bp upstream
Hoxa6	homeobox A6	1356 bp downstream
Hoxaas3	Hoxa cluster antisense RNA 3	within coordinates
Rr630365	regulatory region 630365	374 bp distal
Rr630366	regulatory region 630366	within coordinates
Rr630367	regulatory region 630367	257 bp distal
Tssr60991	transcription start site region 60991	682 bp upstream
Tssr60992	transcription start site region 60992	670 bp upstream
Tssr60993	transcription start site region 60993	594 bp upstream
Tssr60994	transcription start site region 60994	524 bp upstream
Tssr60995	transcription start site region 60995	469 bp upstream