rs30073144 SNP Detail

Summary

• ID
  rs30073144
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:105430407 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTATGGGT GCACTTAAAA
  CTATTAGATG CTACAAAAAT ACGGAAGGTT ATCTGGAAAA GCACAAGGTA ACAGCCACAT
  GTTACTGCTA ATTACCATGC TCAGAATAAC TTCCACCCCG GGGACCCTTG GCTCCACCGG
  GTCCAGATGC ACTTCAGAGC TCGCTCATCA TCTCAGCCCC GGCAGAAAGT CTGCACAGTC
  Y
  CGACTCTGGG CTGCAACAAA AGCAGCTGGC ACGCCAGGAC TGAAATGCAC CAGACAAAAG
  AAAGTGGGTC GGTGCAGAGC GGGGCGCCGA AGGGGGTGTG CGCCTCCGCC CAGCCGCTTG
  CAGCCCGGCG GGGGAGCCGC CGAGCTCGGC CCCCACTCCC ACCCCGCGGG CTCCTCGCCA
  CGCCCCCGGC GCCACCGCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss39148271	mCV23451445	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs30073144					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:105430407 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6065	CpG island 6065	within coordinates
Rnf180	ring finger protein 180	within coordinates
Tssr123952	transcription start site region 123952	1961 bp upstream
Tssr123953	transcription start site region 123953	1925 bp upstream
Tssr123954	transcription start site region 123954	884 bp upstream
Tssr123955	transcription start site region 123955	391 bp downstream
Tssr123956	transcription start site region 123956	404 bp downstream
Tssr123957	transcription start site region 123957	450 bp downstream
Tssr123958	transcription start site region 123958	482 bp downstream
Tssr123959	transcription start site region 123959	527 bp downstream
Tssr123960	transcription start site region 123960	758 bp downstream
Tssr123961	transcription start site region 123961	920 bp downstream