rs30073172 SNP Detail

Summary

• ID
  rs30073172
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:129156074 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CAATGACAGC ATTGCATACA CTAGCAAGCG TTTGCTGCAA GGAACCTGAT ATAGCTGTCT
  CTTGTGAGAC TAGGCCGGGG CCTAGCAAAC ACATAAGTGG ATGCTCTCAG TCAGCTATTG
  GATGGATCAC AGGGCCCCCA ATGGAGGAGC TAGAGAAAGT ATCCAAGGAG CTAAAGAGAT
  CTGCAACCCT GTAGGTGCAA CATTATGAAC TAACCAGTAC CCCGGAGCTC TTGACTCTAG
  CTGCATATGT ATCAAAAGAT GGCCTGGTCG GCCATCACTG GAAAGAGAGG CCCATTGGAC
  W
  CGCAAACTTT ATATGCCCCA GTACAGGGGA ATGCCAGGGC CAAAAAAATG GGAATGGGTG
  GGTAGGAAAG TGGGGGGCAG GGTGTGGGGG ACTTTTGGGC TAGCATTGGA AATATAATTG
  AGGAAAATAT GTAATAAAAA AAAGAGTTGA CAGCTTTCTT TCAAAACTTT AACCAAGACA
  AATTAATAAG TAAGTTACAG TTGTATTTTT TCAAAGGAGA TGGACTCAGG GCTTAAAAGC
  TCTTGCCACA TAATCCTGAC CATCTGGCCT GGATCACAGG AGAACAGGGC AGCAGGAGAG
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45891969	mCV24120179	ABI	CRAMUS_MOUSE	f	SNP	A	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs30073172					SNP	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:129156074 () rs orientation: forward

Symbol	Name	Function Class
Clec2d	C-type lectin domain family 2, member d	1504 bp upstream
Gm53342	predicted gene, 53342	within coordinates
Gm68195	predicted gene, 68195	within coordinates
Rr368193	regulatory region 368193	1226 bp upstream
Rr639386	regulatory region 639386	184 bp proximal
Rr639387	regulatory region 639387	1014 bp proximal
Rr639388	regulatory region 639388	1360 bp proximal
Rr639389	regulatory region 639389	1515 bp proximal
Tssr59096	transcription start site region 59096	1502 bp upstream
Tssr59097	transcription start site region 59097	1528 bp upstream
Tssr59098	transcription start site region 59098	1806 bp upstream
Tssr59099	transcription start site region 59099	1840 bp upstream
Tssr59100	transcription start site region 59100	1864 bp upstream