rs30073522 SNP Detail

Summary

• ID
  rs30073522
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:61122597 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGGG GAGCAAGGAA GACAGCAGAA
  Y
  TCAGAGGGCT GCTTTGGAAC CCTGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39645281	mCV24044320	ABI	CRAMUS_MOUSE	f	SNP	T	T	C				T
ss50415278	NES13457175	PERLEGEN	MM_PANEL2	f	SNP	T			T	T	T		T	C		C	C	T	C		T
ss147252170	ENSMUSSNP1186622	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
ss325641103	CHEV_18_61149179	CHEVERUD	SCREENING_POP	f	SNP										T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30073522					SNP	T	T	C	T	T	T	T	T	C	T	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50415278	NES13457175	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:61122597 () rs orientation: forward

Symbol	Name	Function Class
Camk2a	calcium/calmodulin-dependent protein kinase II alpha	1373 bp downstream
Rr538733	regulatory region 538733	1670 bp distal
Rr538734	regulatory region 538734	within coordinates
Rr538735	regulatory region 538735	210 bp distal
Rr538736	regulatory region 538736	191 bp proximal
Tssr151389	transcription start site region 151389	1977 bp downstream
Tssr151390	transcription start site region 151390	1740 bp downstream
Tssr151391	transcription start site region 151391	1588 bp downstream