rs30074309 SNP Detail

Summary

• ID
  rs30074309
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:136804827 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGCAC TCGGGCGGTG GGTCTGACCC
  R
  GCGGGAGATC CCGCCCGAGA ACCCG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45891582	mCV24051063	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss133848556	ENSMUSSNP3916226	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss321998856	CHEV_6_136776350	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30074309					SNP	A	A	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:136804827 () rs orientation: forward

Symbol	Name	Function Class
BC049715	cDNA sequence BC049715	within coordinates
Cpgi18110	CpG island 18110	within coordinates
Rr380176	regulatory region 380176	within coordinates
Rr640072	regulatory region 640072	within coordinates
Rr640073	regulatory region 640073	394 bp proximal
Rr640074	regulatory region 640074	1025 bp proximal
Tssr2044	transcription start site region 2044	628 bp upstream
Tssr59337	transcription start site region 59337	69 bp downstream
Tssr59338	transcription start site region 59338	31 bp downstream
Tssr59339	transcription start site region 59339	18 bp downstream
Tssr59340	transcription start site region 59340	1 bp upstream
Tssr59341	transcription start site region 59341	585 bp upstream
Tssr59342	transcription start site region 59342	983 bp upstream
Tssr63834	transcription start site region 63834	1796 bp upstream
Tssr63835	transcription start site region 63835	1733 bp upstream
Tssr63836	transcription start site region 63836	85 bp upstream
Tssr63837	transcription start site region 63837	68 bp upstream
Tssr63838	transcription start site region 63838	60 bp upstream
Tssr63839	transcription start site region 63839	4 bp upstream
Tssr63840	transcription start site region 63840	222 bp downstream
Tssr63841	transcription start site region 63841	295 bp downstream
Tssr63842	transcription start site region 63842	357 bp downstream
Wbp11	WW domain binding protein 11	within coordinates