rs30074383 SNP Detail

Summary

• ID
  rs30074383
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:98398508 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATTTTGAT GAAGCAGAGC
  AAACCAAGGT TCATTCACTT CACACTCACT TTTGCTTTAA CATACCAGGA ATGCCCTTTC
  ACTACGTACT TCCTATTTAA GGTCAGCACA GGAAGTCATT CTGTCCCTCA GAAATCCCTC
  TCTGCCTTCC AACAGGTGTT CTCAAACACT ATCAAGGGCC AGATGGTAAA TATTTTAGGT
  Y
  TGGCCAACCA ACCGACAAAG CAGAAGATAT TCTATAGTTA ATGACATGGC AAGAAATTTT
  TTCACTAGTA CTCACAAACG CATTTGTTGT TGTTGAAAGG AAATACAATT CTTTGAGGTC
  AAGGCCTATT TCATTTAGTT TCAAGCCAAA TCACTGTACA TAAGACAGTA TGTTTATCTG
  CAAAAACCAT TATTGGCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39148393	mCV24936498	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C
ss145048333	ENSMUSSNP1561876	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30074383					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:98398508 () rs orientation: forward

Symbol	Name	Function Class
Ankra2	ankyrin repeat family A member 2	1076 bp upstream
Cpgi5999	CpG island 5999	676 bp proximal
Rr281816	regulatory region 281816	within coordinates
Tssr120794	transcription start site region 120794	1105 bp upstream
Tssr120795	transcription start site region 120795	1187 bp upstream
Tssr120796	transcription start site region 120796	1262 bp upstream
Tssr120797	transcription start site region 120797	1326 bp upstream
Tssr123622	transcription start site region 123622	946 bp downstream
Tssr123623	transcription start site region 123623	1026 bp downstream
Utp15	UTP15 small subunit processome component	within coordinates