rs30074718 SNP Detail

Summary

• ID
  rs30074718
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:35906521 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATGTAAATA CACTGTTGAT GTCTTCAGAC ACACCAGAAG
  GGGCATCAGA TCTCATTACA GATGGCTGTG AGCCACCATG TGGTTACTGG GAATTGAACT
  M
  AGGGCCTTTG GAAGAGCAGT CAGTGCTCTT AACCACTGAT CCATCTCTCC AGCCCAGGTA
  GTAAATCTTG TACTAAAATG AAGCAGGGTC TTTGCACAA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39646134	mCV23294150	ABI	CRAMUS_MOUSE	f	SNP	C	A	A	C	A
ss146946371	ENSMUSSNP2887380	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30074718					SNP	C	A	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:35906521 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9842	CpG island 9842	975 bp distal
Rr393530	regulatory region 393530	1223 bp downstream
Rr535947	regulatory region 535947	1900 bp distal
Rr535948	regulatory region 535948	682 bp distal
Tssr150552	transcription start site region 150552	1981 bp downstream
Tssr150553	transcription start site region 150553	1910 bp downstream
Tssr150554	transcription start site region 150554	1869 bp downstream
Tssr150555	transcription start site region 150555	1853 bp downstream
Tssr150556	transcription start site region 150556	1797 bp downstream
Tssr150557	transcription start site region 150557	1758 bp downstream
Tssr150558	transcription start site region 150558	1727 bp downstream
Tssr150559	transcription start site region 150559	1514 bp downstream
Tssr150560	transcription start site region 150560	1337 bp downstream
Tssr150561	transcription start site region 150561	1303 bp downstream
Tssr150562	transcription start site region 150562	333 bp upstream
Ube2d2a	ubiquitin-conjugating enzyme E2D 2A	within coordinates