rs30074975 SNP Detail

Summary

• ID
  rs30074975
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:115435643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTGGACCT TAGAGAAAAC
  GATATAAATG TCCTGTCAAA AAACTTAATT AAAAATTTTT AAACAAATTT AAGGAAATGA
  AGCCTCACTG CCGTTGCTGT TGTTGTTTTA ATTACACTTT TCTGAAGGGA GAATCTTTTA
  ACTTGTTTTG GCCTGAAGTG TGCGGAATAT AATTGCCTAG GATTCCCTAA ACTACATTTC
  R
  TGAACACGCA CTGTAAGACG CCTATTACAA GTACAGCCCA TTCTTTGGAG GAGTTTCACA
  TTTTGTTCCG GAGACAGTTA AGACAAGTGC AAACCTTCAA GACATCTGTA CCCCTTACCC
  GGGCCCCTAT TTCCTGGCCT TGGTGTGCCT CATTATAAAG ACCGGATATG CAGGCCAAGC
  AGAGAGAAGA CTGGGAAGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss45563802	mCV24998109	ABI	CRAMUS_MOUSE	f	SNP	G	A					A
ss46910769	NES10698183	PERLEGEN	MM_PANEL2	f	SNP		A	A	A	A	A		G	A	A	A	A	A	G	G
ss135663633	ENSMUSSNP1424119	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30074975					SNP	G	A	A	A	A	A	A	G	A	A	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46910769	NES10698183	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115435643 () rs orientation: forward

Symbol	Name	Function Class
Gm40124	predicted gene, 40124	398 bp upstream
Rr65099	regulatory region 65099	843 bp distal
Rr367536	regulatory region 367536	335 bp upstream
Rr367537	regulatory region 367537	734 bp upstream
Tssr35264	transcription start site region 35264	463 bp upstream
Tssr35265	transcription start site region 35265	440 bp upstream