rs30074978 SNP Detail

Summary

• ID
  rs30074978
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:115435676 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCAAAAAA CTTAATTAAA
  AATTTTTAAA CAAATTTAAG GAAATGAAGC CTCACTGCCG TTGCTGTTGT TGTTTTAATT
  ACACTTTTCT GAAGGGAGAA TCTTTTAACT TGTTTTGGCC TGAAGTGTGC GGAATATAAT
  TGCCTAGGAT TCCCTAAACT ACATTTCATG AACACGCACT GTAAGACGCC TATTACAAGT
  R
  CAGCCCATTC TTTGGAGGAG TTTCACATTT TGTTCCGGAG ACAGTTAAGA CAAGTGCAAA
  CCTTCAAGAC ATCTGTACCC CTTACCCGGG CCCCTATTTC CTGGCCTTGG TGTGCCTCAT
  TATAAAGACC GGATATGCAG GCCAAGCAGA GAGAAGACTG GGAAGTCTCC TTCACTCTTC
  CTCGCACCCC CTACCCCTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46910772	NES10698184	PERLEGEN	MM_PANEL2	f	SNP		A	A	A	A	A	G	A	A	A	G	A	G	G
ss135663636	ENSMUSSNP904932	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30074978					SNP	G	A	A	A	A	A	G	A	A	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46910772	NES10698184	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115435676 () rs orientation: forward

Symbol	Name	Function Class
Gm40124	predicted gene, 40124	431 bp upstream
Rr65099	regulatory region 65099	876 bp distal
Rr367536	regulatory region 367536	302 bp upstream
Rr367537	regulatory region 367537	701 bp upstream
Tssr35264	transcription start site region 35264	496 bp upstream
Tssr35265	transcription start site region 35265	473 bp upstream