rs30074981 SNP Detail

Summary

• ID
  rs30074981
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:115435730 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCCGTTGC TGTTGTTGTT
  TTAATTACAC TTTTCTGAAG GGAGAATCTT TTAACTTGTT TTGGCCTGAA GTGTGCGGAA
  TATAATTGCC TAGGATTCCC TAAACTACAT TTCATGAACA CGCACTGTAA GACGCCTATT
  ACAAGTACAG CCCATTCTTT GGAGGAGTTT CACATTTTGT TCCGGAGACA GTTAAGACAA
  K
  TGCAAACCTT CAAGACATCT GTACCCCTTA CCCGGGCCCC TATTTCCTGG CCTTGGTGTG
  CCTCATTATA AAGACCGGAT ATGCAGGCCA AGCAGAGAGA AGACTGGGAA GTCTCCTTCA
  CTCTTCCTCG CACCCCCTAC CCCTTGGCTC TTGTGGGAGG AAAAAAAAAT CCCCTGGTGC
  AGGAAATGGG CCTGAAGCAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss45470831	mCV24998119	ABI	CRAMUS_MOUSE	f	SNP	T	G					G
ss46910775	NES10698185	PERLEGEN	MM_PANEL2	f	SNP		G	G	G	G	G		T	G	G	G	T	G	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30074981					SNP	T	G	G	G	G	G	G	T	G	G	G	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46910775	NES10698185	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115435730 () rs orientation: forward

Symbol	Name	Function Class
Gm40124	predicted gene, 40124	485 bp upstream
Rr65099	regulatory region 65099	930 bp distal
Rr367536	regulatory region 367536	248 bp upstream
Rr367537	regulatory region 367537	647 bp upstream
Tssr35264	transcription start site region 35264	550 bp upstream
Tssr35265	transcription start site region 35265	527 bp upstream