rs30075438 SNP Detail

Summary

• ID
  rs30075438
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:39252663 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTATTAGG TATTGCCACA
  TTCCTGTAAC TGCTGGGCTG GTGTGGGCAT AGTTACAAGT AACATTTACA TAATACCTGA
  TACAGAAACC TCAGTGTCTC AGAATAACTA TTTAACGATG ATGCCTTTTG CTCTATTCAG
  ACCAGTGAAA TGAGCACACA TTTCTGGCTC CATTTAATAA ATTACCTCCT TGAGGGCATC
  R
  CATCCTGTTC CCCTGGAAAA GTTCATTCAC CGCACATGGG TAAACTAAGT GCTTTTCCTT
  TATGAACCCC GGTGTTTACT CTCAGCCCAT AAGCAGCATA AAGGCGCTCT TACATTATGA
  CTATTATCAA GAGCTCAGAC AGACTTCATT GCAGAGCTGT TCCTATTGCA GGTGATGGGT
  CAGCACTGCT TCAGATAAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39148465	mCV24499043	ABI	CRAMUS_MOUSE	f	SNP		A						G	G
ss49101726	NES12439478	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G		G	G	G		G	G	A	G		A
ss148902880	ENSMUSSNP5541039	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							G
ss324322195	CHEV_13_39160556	CHEVERUD	SCREENING_POP	f	SNP												G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30075438					SNP	A	A	G	G	G	G	G	G	G	G	G	G	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49101726	NES12439478	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:39252663 () rs orientation: forward

Symbol	Name	Function Class
Gm60523	predicted gene, 60523	457 bp upstream
Rr388296	regulatory region 388296	626 bp upstream