rs30075544 SNP Detail

Summary

• ID
  rs30075544
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:115435812 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATTGCCTA GGATTCCCTA
  AACTACATTT CATGAACACG CACTGTAAGA CGCCTATTAC AAGTACAGCC CATTCTTTGG
  AGGAGTTTCA CATTTTGTTC CGGAGACAGT TAAGACAAGT GCAAACCTTC AAGACATCTG
  TACCCCTTAC CCGGGCCCCT ATTTCCTGGC CTTGGTGTGC CTCATTATAA AGACCGGATA
  W
  GCAGGCCAAG CAGAGAGAAG ACTGGGAAGT CTCCTTCACT CTTCCTCGCA CCCCCTACCC
  CTTGGCTCTT GTGGGAGGAA AAAAAAATCC CCTGGTGCAG GAAATGGGCC TGAAGCAATG
  AGACAGGTCC AGAGTAGAGG AGAAAGGAGC AGGGCACACA GGCCACACCA GACATCAAAA
  TATTTTCAGT GCGGAAGGTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46910778	NES10698186	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	A	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30075544					SNP	T	T	T	T	T	A	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46910778	NES10698186	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115435812 () rs orientation: forward

Symbol	Name	Function Class
Gm40124	predicted gene, 40124	567 bp upstream
Rr65099	regulatory region 65099	1012 bp distal
Rr367536	regulatory region 367536	166 bp upstream
Rr367537	regulatory region 367537	565 bp upstream
Tssr35264	transcription start site region 35264	632 bp upstream
Tssr35265	transcription start site region 35265	609 bp upstream